Select a name from DATABASE NAME below and insert it into the square brackets of Reporter Database Entry [xxx] or Composite Element Database Entry column headings in the ADF table.
| DATABASE NAME | DATABASE DETAILS | DATABASE URL |
|---|---|---|
| abrc_stock | Arabidopsis Biological Resource Center (ABRC) at The Ohio State University | http://www.arabidopsis.org/abrc/ |
| AmoebaDB | Amoeba DB | amoebadb.org/? |
| asrp | Arabidopsis Small RNA Project | asrp.danforthcenter.org/? |
| atcc | ATCC | http://www.lgcstandards-atcc.org |
| bdgp | Berkeley Drosophila Genome Project | http://www.fruitfly.org |
| beebase | Bee base | http://hymenopteragenome.org/beebase/ |
| candida_genome_db | Candida genome database | www.candidagenome.org/? |
| candidadb | Candida database | genolist.pasteur.fr/CandidaDB/? |
| catma | Complete Arabidopsis Transcriptome MicroArray (CATMA) project | www.catma.org/? |
| celera_transcript | Celera transcript | http://www.pantherdb.org/panther/globalSearch.do |
| cog | NCBI COG (Phylogenetic classification of proteins encoded in complete genomes) | http://www.ncbi.nlm.nih.gov/COG |
| dbsnp | NCBI dbSNP | www.ncbi.nlm.nih.gov/SNP/? |
| dfci_rgi | DFCI Rat Gene Index | http://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=rat |
| dfci_asgi | DFCI Atlantic Salmon Gene Index (AsGI) | http://compbio.dfci.harvard.edu/tgi/gi/asgi/searching/xpress_search.html |
| dfci_atgi | DFCI Arabidopsis Gene Index | http://compbio.dfci.harvard.edu/cgi-bin/tgi/gimain.pl?gudb=arab |
| dfci_mtgi | DFCI Medicago truncatula Gene Index (MtGI) | http://compbio.dfci.harvard.edu/tgi/gi/mtgi/searching/xpress_search.html |
| dfci_ssgi | DFCI Porcine Gene Index (SsGI) | http://compbio.dfci.harvard.edu/tgi/gi/ssgi/searching/xpress_search.html |
| dfci_stgi | DFCI Solanum tuberosum Gene Index (StGI) | http://compbio.dfci.harvard.edu/tgi/gi/stgi/searching/xpress_search.html |
| dfci_zgi | DFCI Zebrafish Gene Index (ZGI) | http://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=zfish |
| dfci_zmgi | DFCI Maize Gene Index (ZGI) | http://compbio.dfci.harvard.edu/cgi-bin/tgi/gimain.pl?gudb=maize |
| dictybase | dictyBase for Dictyostelium discoideum | dictybase.org/? |
| embl | European Nucleotide Archive at EMBL-EBI | www.ebi.ac.uk/ena |
| ens_fam_id | Ensembl gene family stable identifier | www.ensembl.org |
| ens_gene_id | Ensembl gene stable identifier | www.ensembl.org |
| ens_trscrpt_id | Ensembl transcript stable identifier | www.ensembl.org |
| ensembl | Ensembl | www.ensembl.org |
| entrez | NCBI Entrez | http://www.ncbi.nlm.nih.gov/entrez |
| entrez_gene | NCBI Entrez gene identifier | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene |
| flybase | Flybase | www.flybase.org |
| flybase_bt | Flybase (body parts) | www.flybase.org |
| flybase_computed_gene | Flybase (computed gene) | www.flybase.org |
| flybase_dv | Flybase (developmental stages) | www.flybase.org |
| genbank | GenBank | www.ncbi.nlm.nih.gov/genbank |
| genecards | Genecards | http://www.genecards.org |
| genedb | Gene DB | http://www.genedb.org/Homepage |
| genesnps | GeneSNPs | www.genome.utah.edu/genesnps/ |
| genolevures | Genomic Exploration of the Hemiascomycete Yeasts | http://cbi.labri.fr/Genolevures/ |
| go | Gene Ontology | http://www.geneontology.org |
| gpcrdb | GPCRDB (information system for G protein-coupled receptors) | www.gpcr.org/7tm/ |
| gxd | Gene Expression Database at Jackson Laboratory (mouse data) | www.informatics.jax.org/expression.shtml? |
| halolex | HaloLex (the information system for halophilic archaea) | http://www.webcitation.org/getfile?fileid=01b4e193eb9c261f676e242d43a243e918fe52b5 |
| HarvEST35 | ESTs from HarvEST project | http://harvest-web.org/hweb/pickassy.wc |
| hgmd | The Human Gene Mutation Database at the Institute of Medical Genetics in Cardiff | www.hgmd.org/? |
| howdy | Human Organized Whole Genome Database | http://howdy.biosciencedbc.jp/HOWDY/top_en.pl |
| hpa | The human protein atlas | http://www.proteinatlas.org/index.php |
| hugo | Human Genome Organization (gene names) | www.genenames.org/? |
| image | IMAGE consortium | www.imageconsortium.org/? |
| incyte | Incyte Genomics | http://www.incyte.com |
| insdc_locus_tag | INSDC locus tags | www.ebi.ac.uk/ena/about/locus_tag |
| interpro | InterPro at EMBL-EBI | www.ebi.ac.uk/interpro/? |
| kegg | KEGG pathway database | www.genome.jp/kegg/pathway.html? |
| locus | NCBI Gene | http://www.ncbi.nlm.nih.gov/gene/ |
| mgc | NCBI Mammalian Gene Collection | mgc.nci.nih.gov/? |
| mgd | Mouse Genome Database | www.nih.gov/science/models/mouse/resources/mgd.html? |
| mips | The MIPS Mammalian Protein-Protein Interaction Database | http://mips.helmholtz-muenchen.de/proj/ppi/ |
| mirbase | microRNA database | www.mirbase.org |
| MO | MGED Ontology | http://mged.sourceforge.net/ontologies/MGEDontology.php |
| msu_rga | Rice Genome Annotation Project | http://rice.plantbiology.msu.edu/analyses_search_blast.shtml |
| mtb | Mouse Tumor Biology (MTB) Database | www.informatics.jax.org/mtbwi? |
| nasc | The European Arabidopsis Stock Centre | http://arabidopsis.info/CollectionInfo?id=19 |
| ncbi_clone_registry | NCBI Clone registry | www.ncbi.nlm.nih.gov/clone? |
| ncbitax | NCBI Taxonomy database | http://www.ncbi.nlm.nih.gov/taxonomy |
| netaffx | Affymetrix NetAffx | http://www.affymetrix.com/analysis/index.affx |
| neurosporadb | Neurospora database at Broad Institute | http://www.broadinstitute.org/annotation/genome/neurospora/GeneIndex.html |
| nia_nih | NIH National Institute of Ageing | http://www.nia.nih.gov/research/scientific-resources |
| omim | Online Mendelian Inheritance in Men | http://www.omim.org |
| pdb | Protein Data Bank | www.rcsb.org/ |
| pfam | Protein family | http://pfam.xfam.org/ |
| pharmgkb | PharmaGKB (pharacogenomics knowledgebase) | www.pharmgkb.org |
| phyca11 | Phytophthora capsici sequencing project | http://genome.jgi-psf.org/Phyca11/Phyca11.home.html |
| pir | Protein Information Resource | pir.georgetown.edu |
| plantgdb | Plant GDB (resources for comparative plant genomics) | www.plantgdb.org/? |
| PlantOntology | Plant Ontology database | http://plantontology.org/ |
| plasmodb | Plasmodium Genomics Resource | www.plasmodb.org/? |
| populusDB | Populus tremula x tremuloides genomic sequence database. | www.populus.db.umu.se |
| prf | Synthetic compounds database | http://www.prf.or.jp/aboutdb-e.html |
| prodom | ProDom (a comprehensive set of protein domain families automatically generated from the UniProt Knowledge Database) | prodom.prabi.fr/? |
| prosite | Prosite, database of protein domains, families and functional sites | http://www.expasy.ch/prosite |
| pubmed | PubMed literature database | http://www.ncbi.nlm.nih.gov/pubmed |
| refseq | NCBI RefSeq | http://www.ncbi.nlm.nih.gov/refseq |
| rgd | Rat Genome Database | rgd.mcw.edu/? |
| rgd_qtl | Rat Genome Database QTLs | rgd.mcw.edu/? |
| rhizobase | Rhizobase (soil and rhizosphere bacteria of agronomic importance) | genome.microbedb.jp/rhizobase/? |
| scop | Structural classification of proteins | scop.mrc-lmb.cam.ac.uk/scop/? |
| sgd | Saccharomyces Genome Database (SGD) | www.yeastgenome.org/ |
| sgn | Tomatoes genomics network | solgenomics.net/ |
| subtilist | Subtilist, Bacillus subtilis database | http://genolist.pasteur.fr/SubtiList/ |
| sulfolobus | Sulfolobus Database | www.sulfolobus.org/ |
| swissprot | UniProt/SwissProt (manually annotated and reviewed protein sequences) | www.ebi.ac.uk/uniprot |
| tair | The Arabidopsis Information Resource. | www.arabidopsis.org/ |
| tair_anat | TAIR Anatomy Ontology. | www.arabidopsis.org/ |
| tair_dev | TAIR Development Ontology. | www.arabidopsis.org/ |
| tigr_tagi | TIGR: TaGI. The TIGR Anopheles gambiae (mosquito) Database. | www.arabidopsis.org/ |
| ToxoDB | ToxoDB: Toxoplasma genomics resources | http://www.toxodb.org |
| toxoest | ToxoDB ESTs | http://toxodb.org/toxo/ |
| trembl | UniProt/trEMBL (automatically annotated protein sequences) | http://www.ebi.ac.uk/uniprot |
| TriTrypDB | Database for pathogens of the family Trypanosomatidae, including organisms in both Leishmania and Trypanosoma genera | http://tritrypdb.org |
| tuberculist | Genomic information on tubercle bacilli such as M. tuberculosis | tuberculist.epfl.ch/? |
| uhn_cpg | UHN CpG Island Database | http://data.microarrays.ca/cpg/ |
| unigene | UniGene. Non-redundant, gene-oriented clusters | www.ncbi.nlm.nih.gov/unigene |
| uniprot | UniProt | www.uniprot.org/? |
| unists | NCBI UniSTS (now retired) | www.ncbi.nih.gov/genome/sts/ |
| vectorbase | VectorBase, for Invertebrate Vectors of Human Pathogens | https://www.vectorbase.org/? |
| vega_cf | The Vertebrate Genome Annotation (VEGA) database (dog data) | vega.sanger.ac.uk/? |
| vega_dr | The Vertebrate Genome Annotation (VEGA) database (zebrafish data) | vega.sanger.ac.uk/? |
| vega_hs | The Vertebrate Genome Annotation (VEGA) database (human data) | vega.sanger.ac.uk/? |
| vega_mm | The Vertebrate Genome Annotation (VEGA) database (mouse data) | vega.sanger.ac.uk/? |
| wormbase | Wormbase, Genome and biology of C. elegans | www.wormbase.org |